PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676752346
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 468aa    MW: 54034.9 Da    PI: 7.536
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676752346genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011196218123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C+ C    +rk++L+rH+r++
  676752346 196 FFCEFCLNFMKRKEQLQRHMRKC 218
                67*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541601.1E-2346163IPR016197Chromo domain-like
Gene3DG3DSA:2.30.30.2701.3E-3551123No hitNo description
PfamPF117174.5E-1953111IPR025995RNA binding activity-knot of a chromodomain
CDDcd000245.96E-766112No hitNo description
SMARTSM002981.1E-767126IPR000953Chromo/chromo shadow domain
Gene3DG3DSA:2.30.30.2701.3E-35157207No hitNo description
PROSITE profilePS5172671.821162463IPR002717Histone acetyltransferase domain, MYST-type
SuperFamilySSF557291.85E-105163291IPR016181Acyl-CoA N-acyltransferase
Gene3DG3DSA:3.40.630.302.7E-69221394IPR016181Acyl-CoA N-acyltransferase
PfamPF018533.7E-33223294IPR002717Histone acetyltransferase domain, MYST-type
CDDcd043010.00515314362No hitNo description
SuperFamilySSF557291.85E-105322464IPR016181Acyl-CoA N-acyltransferase
PfamPF018535.5E-43323430IPR002717Histone acetyltransferase domain, MYST-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010224Biological Processresponse to UV-B
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0043995Molecular Functionhistone acetyltransferase activity (H4-K5 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MGSSANTETT NLTASPATNG GDANPNHNSA AMIDRKSSEL DASKKRRTGV LPLEVGTRVA  60
CLWRDGKYHP VKVIERRKNH SDGNNEYEYY VHYTEFNRRL DEWIKLDQLD LGSVECALDE  120
KVEDKVTSLK MTRHQKRKID ETHVEGHEEL DAASLREHEE FTKVKNIATI ELGKYEIETW  180
YFSPFPPEYN DCVKLFFCEF CLNFMKRKEQ LQRHMRKCDL KHPPGDEIYR SSTLSMFEVD  240
GKKNKVYAQN LCYLAKLFLD HKTLYYDVDL FLFYILCECD DRGCHMVGYF SKNILVTTGM  300
WHINRQLLAD CIHISLCLVI ISEKHSEEAY NLACILTLPP YQRKGYGKFL IAFSYELSKK  360
EGKVGTPERP LSDLGLVSYR GYWTRILLDI LKKHKGNISI KELSDMTAIK AEDILSTLQS  420
LELIQYRKGQ HVICADPKVL DRHLKAAGRG GLDVDVSKMI WTPYKEQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dnc_A1e-1121584671282Histone acetyltransferase KAT8
4dnc_B1e-1121584671282Histone acetyltransferase KAT8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4938120.0AB493812.1 Arabidopsis thaliana At5g64610 mRNA for hypothetical protein, partial cds, clone: RAAt5g64610.
GenBankAY0996840.0AY099684.1 Arabidopsis thaliana histone acetyltransferase (At5g64610) mRNA, complete cds.
GenBankBT0002770.0BT000277.1 Arabidopsis thaliana histone acetyltransferase (At5g64610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394133.10.0hypothetical protein EUTSA_v10004220mg
SwissprotQ9FLF70.0MYST1_ARATH; Histone acetyltransferase of the MYST family 1
TrEMBLV4KJM10.0V4KJM1_EUTSA; Histone acetyltransferase
STRINGAT5G64610.10.0(Arabidopsis thaliana)
STRINGBra037784.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM480656